StructAlign - a program for alignment of structures of DNA-protein complexes

PDB ID
.
optional parameters
Chain of protein you want to align
:
Start
-
End
of protein sequence
PDB 1
.
:
-
PDB 2
.
:
-
+

Or upload a file with your multiple alignment request in this format:

If you get stuck with program input, try example data and click Align!