Lcore

LCore is a program for classification of 3D structures of macromolecular complexes on the basis of their geometric core.

Alignment (example):

Distance threshold (Å)
Minimal core size (#aa's)
Alternative core new atoms (%)
Max number of cores on output
Core identifier for chain superimposition (0 for the main core)


The service is created with support of Russian Science Foundation, grant no. 14-50-00029 (algorithm and testing), and Russian Foundation of Basic Research, grant no. 14-04-01693 (programming).

If using this program, please cite:
Yu.A.Vakulenko, B.E.Nagaev, A.V.Alexeevski, A.S.Karyagina, and S.A.Spirin. A New Program for Detecting the Geometrical Core of a Set of Structures of Macromolecular Complexes. Biochemistry (Moscow), 2016, Vol. 81, No. 4, pp. 428–431. [Springer Link]