#.......# 
 S.......S 
  T.....E 
    R.Q 
     U 
    E.C 
  N.....T 
 C.......U 
 #.......R
  E.....E 
    S.S
What are sheet maps and what is a ProtOn project?

Help

About

    Services:
SheeP
Architector
ProtOn

    Planned services:
YADD
MBA
Tools

ProtOn
Proteins Online (beta version)
SheeP detects all beta-sheets in 3D protein structure (various detectors are implemented), creates beta-sheet maps, visualizes beta-sheets by JMol. After that, Architector detects architectures and structural motifs in 3D protein structure. Detected architectures are those that consist of beta-layers and, possibly, adjacent alpha-helical layers. Note, that Architector is currently a beta-vertion. Both SheeP and Architector programs are implemented as joined project called ProtOn.

Start new ProtOn job:
 

Upload your local file (in PDB format):
or insert PDB code
or use example (1LUC A:)

Method:
 SheeP based on DSSP
   (recommended)
 original DSSP
 SheeP based on STRIDE
 original STRIDE
 SheeP based on MakeSSP
   (recommended for C-alpha only files)
Output:
 Show sheet maps
Color sheet sides:
     by Ca -> Cb direction
     by Ca location (up or down the sheet)
                Report about:

 Sheets
 Strands and helixes
 Strands
 Helixes
 Crests
 Alpha-layers
 Architectures
 Motifs
 Contacts

 
Contact: evaksianov@gmail.com
Download ProtOn offline version and source code.